NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000582

Scaffold Ga0209190_1000582


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000582 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26684
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (86.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F005738Metagenome / Metatranscriptome391Y
F103130Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100058211F103130AGGAMKRIDQWKAKLKVAHAERRIRDREANAAVRALMRVRATIIDLERKIDKHLAKP
Ga0209190_100058218F000273GGAMSDEKESAKSALIEKITFALLPLLFSCVVYLMSSLSNLAHEVTILNSKISLVVTSDNKQATNTGAELARERLRQDLSLEIQKNRDDIQYNRQKIAIIETKLERK
Ga0209190_100058237F005738N/AMSFGVALRNSVAIGLAGIVTLFSGTRDSGGSVGNLLTESGDNLVQEDGGQILLE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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