NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000281

Scaffold Ga0209190_1000281


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000281 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37006
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025027Metagenome203Y
F033800Metagenome176N
F044484Metagenome154Y
F053850Metagenome140N
F102565Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100028110F044484N/AMKYIISESRFESLILNYLNDSLKNIKSHSEEIDGEEYNWWGTEGTPVFVLKHVKDKLGIAFDEQYVSSMCDLFGISDYEVKTYILRWINSELDIHPEFTIKQEMF
Ga0209190_100028116F102565N/AMNKQIFKRCPTLGEYHGMALPYVKSQEEYREFYNQHKEIIDMEAQVYSEIFNDRKTMGGNDEIHKMNYDERNN
Ga0209190_100028125F025027N/AMNNIEQDVKVLKKLLNSPLFLGKYSIIKRVWVEEYGTNVIDIVMSVEEPANEYWPIREEIRSFIWNIAKMSGVTSRFNIYP
Ga0209190_100028143F053850N/AMKKTLFAALLMITSIAAFSQEKPVLHNQFSDYVQFRKDHQRPEFNRHHRPEFEPQHFPMQPKPLSVTVKGDKVIVVFKKEDFQRLRPMVRDRVMWREIPRGRAHQMFIEKMEH
Ga0209190_10002816F033800AGGAGMFGGGYIFTIMDNTYIALKKILNIMVPEKYPMVLDIKVIDDSYEYDNSTNYLIYLGVSPDELEVLSSSDVRDYIENVSRYVLNGNETLRIIFYNPEHW
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