NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000182

Scaffold Ga0209190_1000182


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000182 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44466
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (21.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053244Metagenome / Metatranscriptome141Y
F058087Metagenome / Metatranscriptome135N
F071229Metagenome / Metatranscriptome122Y
F093290Metagenome / Metatranscriptome106N
F093858Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100018222F093290N/AMATQIIPKKSSVLGKIPLTGDLAVGELVQNLADHCLYSKDASGNVFRIGTRPVPDKVEVFDIIGANLFYGKLAYADFPNSGSIYDSALWDVSRTTTDAAGNVTAEASATGAWSNKTNLQF
Ga0209190_100018227F058087AGGMNARRIALLMVLLSFVFLGMAFLTSCVNVPIPPFGERVGELGNLQLALSAKYIPNTPPESPGETSHAFAWSKYGEAKLLKDK
Ga0209190_100018232F093858N/AVDLRPDRRDLKQETLEMIDLNDPAAVCRSLGYFLDFLVMFVPPVALAFTAWRIAR
Ga0209190_100018235F071229GGAGGMSDTTGIIGAGLILMSLYTTFQLGIECERERIRRERRRRFDEDQDNHDSANHDDFD
Ga0209190_10001824F053244N/AMRLGITLARNGDTWQVKHLPSVPLAEQLTDFKAKQVAGEFSADETIIVSLNETLKRHASKHSAVVEVEMEDSPKKKK
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