NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1057203

Scaffold Ga0209087_1057203


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1057203 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1760
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F030333Metagenome185Y
F034448Metagenome174Y
F040990Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10572033F040990N/AMNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDEFVARSSRVWLENANAVYLVHPRWNLGRGQVNDKEFTMIKLRAKTIKWWQDE
Ga0209087_10572034F015302GGTGGMSRDEYYRDTAARLDTIIGGDTTHFLRLQRVKNEYDALACDVPIGQGFLTFYDYVKEYYGVKLEFDGDNVSLEYAVVDEKKYTVFLLKFGQ
Ga0209087_10572035F034448N/AMYINNFELPRPPEEILDRCHEVTIGDPAFRMWAMKKYCRENNLSLVWSELVETSDVSAFFDEACAFYFIDPADATLFTLKFK
Ga0209087_10572036F030333N/AMIDRNPRLTIPVKTYTHYSECEPWCLANIGEWNIVWWKDFPDIAMAVVVEGPHEDCYWFHNEQDALMFRLRFR
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