NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1025736

Scaffold Ga0209087_1025736


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1025736 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2856
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F014590Metagenome261Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10257362F014590GGAGGVRTRHLQLVTHEHSVTIKTKSDVSSPYGPVRAGLTTSQITNEARLSELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALSNIATEEDGTDADRC
Ga0209087_10257363F044984GGAGGMTEANRRMATASRKAVRDRNYRRARDRALVRLTHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLGVGVHTRANAVPDFAGRTDYESTDEGYNGGEA
Ga0209087_10257364F001477AGGAGGMSNIYTIHPPKSELILFYEVVEAGGENTWGGADAGQAIQWLTHAPAGSRLLVSAWDSDEEDAHLVGQTLDITEIVRAASL
Ga0209087_10257365F000821GGAGMNEEYLKAKFDLCLDQAEKDLQQEEIARAIKNLERANSALSRLFGLEEEADE
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