NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1017553

Scaffold Ga0209087_1017553


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1017553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3553
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004599Metagenome / Metatranscriptome431N
F006539Metagenome / Metatranscriptome370Y
F028508Metagenome / Metatranscriptome191Y
F032636Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_101755310F028508GGAGMTKPIIRIHNIETDEIIDREMTNNEFAVYELDQAEDQAKLAEAEAKANAKAAIADRLGLTVDELKLLLG
Ga0209087_10175532F004599GGAGMAFNLADYEDVATLNKWFISNFPFGRSDISVISHDAVNGYILVQATLWRDSKDTSPAVSNVAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKNGNSQIIEMALRKSFADDAKPASEPTTWSVGDVAQALSTKPKQQECIHGLMILKEGTAKTGKPYFGYVCSAPKGEQCNAKWAVTAANGSWFFREEE
Ga0209087_10175533F006539GGAMIETTAPWIVLYSILGYLIVWGIHSTIKENYGQTMYWRGRKHGYDMHRRITDAKRDQVFDYDKQN
Ga0209087_10175534F032636N/AMAVSQLLESRMGLETDYRDRSIDDHIDEFEDIGVI
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