NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1017227

Scaffold Ga0209087_1017227


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1017227 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3590
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037064Metagenome / Metatranscriptome168N
F041011Metagenome / Metatranscriptome160N
F071220Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10172271F037064N/AMREESNFVIKYASHMLPSIARGIERHDACFYAGEGHIATVLYEGFAVDIYCDGDTKIYNRNKDQYYTGGADLILGGFDTDAKFHKATEDESLVMDMNSWFDLYCYGEHLDAVSHMLNEAIDMAKDYVYQEYFWAETLLDMLDK
Ga0209087_10172272F041011AGGMHTCQIMLVEADSAEQALSYVRGTITHAETPYPSWSDWHGGLGEGLAGRWSGLFLGWEESRDVLCYTENKVLADDIIKEFVSYRITETKNLWDEMKKGNGFDVERSISEYNPYEQKFDDSGMNMYRLQKIAKILNNDWCSDTGVYDLQEHTANLEYFKGRLDKSPEKQYLVPVDFHF
Ga0209087_10172275F071220AGGAMTNKVKGVVDTVVAIRSTTTTIKNDTKVIALDETNAKELLAKFEANKADKATLEAQYKELQAEIYSLLGYKKVGDKWIGVADEGTIDGVSVIKVGTQTRTNFDKEKFLQENPELLPLVEAFTSQSTNTILKTTR
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Biomedical Sciences Research Center "Alexander Fleming"
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