NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1013752

Scaffold Ga0209087_1013752


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1013752 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4083
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F023293Metagenome210Y
F032573Metagenome179Y
F057197Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10137523F057197GAGGMANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKAAINAYRDLLRRDALGFLETSHPTETEKTGE
Ga0209087_10137525F019099GGAGGLIINGRIVKDWDKSQISTGYQRPNQFRIVTWDMGRVQGWLLGQNPLARNIIEKVIR
Ga0209087_10137526F023293GAGGMRYGILDDEGNVVRWVWHMPTYPHIVQKIKRKRKPPLDLSNVPEALF
Ga0209087_10137528F032573AGGMTKSEAWRKWWSVIHKTIPAGSYDPREAFMWEAWEAAWEEATKQSKTEITHLKEQLMRSNTHDGAYKAAFLAGQMAARGGSWK
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