NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209087_1008491

Scaffold Ga0209087_1008491


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1008491 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5362
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010247Metagenome / Metatranscriptome306Y
F013525Metagenome / Metatranscriptome270Y
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100849111F013525AGGMHDLALKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVSEAEKWAYSDKDYATIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLSR
Ga0209087_100849114F010247AGGAGMNVQGVIKYVYDNRLGKDGQANKYPNFKFGVGEPPQEIVLWSAILHPAIAKGKKISVAVSASKKNGSLFVQTNEKKQPIIQELPSNEVKPDTSFNPDELESQLQQVAKDFDADLTIETKKPFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFHN
Ga0209087_10084919F032656GGAMFYLVTYAINFVKVNDEKIKEDVAHVRFFDSQNFANSNSFLASLKQVKKLRVTSVEWELEECSWFDYYDDISNTIH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.