NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1007456

Scaffold Ga0209087_1007456


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1007456 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5752
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027776Metagenome193Y
F051705Metagenome143N
F067676Metagenome125Y
F073284Metagenome120Y
F079788Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100745611F051705GAGGMQITAIFQNDDEAIKAIHSERAWQTLHDINHVLRQNRKHGLPFEQTVSEIQAYVNDALALIPD
Ga0209087_100745615F073284GGAGMKKLETMTQEEKLEAFNTLQIYIESAVESEQSEPAEFKIETQHRVELILVNLREIFGFPCNS
Ga0209087_10074564F027776GGTGGMMNPLEIEIKRTVFAHLPAVGDFGILSRGDLATVLHTACTEAALAGWARGADSVQRRVEEELTTLRQELKATQVELAYAKAN
Ga0209087_10074565F079788GGAGMDTDDEIESWASIALGLIASVFFFIGLASVIVAACMAWGYYTYEPVCGSIAALFTQECKA
Ga0209087_10074569F067676N/AMRAHCGLKPNSRRKILTKEEALRIIKLLSALESWAFSQPDSRSLPDYLVEDIGNAMVLLERIILDKNA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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