NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1005167

Scaffold Ga0209087_1005167


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1005167 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7023
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F004432Metagenome / Metatranscriptome438Y
F005117Metagenome411Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10051672F000332GGAGMRWLLLLLLLLGLVGAVAKSGCHVREFYGIGYTTHDPTQRHKEMMAWLDQNAGHCKSTEYIVIWNNLAEWAGAADSTWLRSKVIHGYKDALEREAK
Ga0209087_10051673F005117GAGMKVSYDKWYPVVQPRGLVQQEAFIKKVDKQNAEHALQVQIDNTVKKFHQYEYEIYEFRMRQITLNIEIVGLKRDIDRLV
Ga0209087_10051674F004432N/AMVTAKKVPAKAPAKVAPVKRRTPKPKAEQTINVSVAAPAPVKAEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQEALLAPARSLMKDLDGLVVLVHKANLTTNSRTTVLALNADGSREKSMEGTVTSLFNASADRNAAMVAMLNNEVLCEDFNPSSKVGEWGAKQGVKFMCRGSIPPDMGKFAGYVAIGFKTKPEDIAALKTRINLAATDMSED
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