NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1004188

Scaffold Ga0209087_1004188


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1004188 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7882
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011648Metagenome / Metatranscriptome288Y
F012854Metagenome / Metatranscriptome276Y
F086791Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100418815F086791N/AMWLGDTYLDIHGSAEPDEPSLGHSGCLDIEDVFVCDTKTSVLEMIHALNFDQFVKQAEEAYSELEKS
Ga0209087_100418818F011648AGGAGMSEIEQQTHDLNQFQAHLERIFKDLEDGIFITQAEINDLRYACGLPRNSHVNPILRDVINDFGNIFGANK
Ga0209087_10041887F012854GGAGMNLTTQQQHAIIKLNAKVVTVHENIAYDANGNEVAYDLQAVTAQAQADAQAVIDTKASALAKLAALGLTQDEVKSLIG
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