NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1003113

Scaffold Ga0209087_1003113


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1003113 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9171
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F016963Metagenome243N
F020510Metagenome / Metatranscriptome223Y
F048834Metagenome147N
F072095Metagenome121N
F081048Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100311310F005502AGAAGMRMLLSILALFGFSTSKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMGLPKVAMVEVMK
Ga0209087_100311311F016963GAGGMIEVLPEETTHDQLLNRVRSLARQLAEAKAALAASEARENDLMDRIRSGL
Ga0209087_100311317F072095AGGAMIRDLEKEGVLPATASQSYGSAQLSQTTALIDLQVKHRDLRNRLDRIEEILESLLKKNGVQS
Ga0209087_100311320F048834GGAGGMAIPSVDWAAALDAYVAGDREEVVPPGWFTKIAIAKLWGKTPVYTNKVLTRMMKSGGAERKVFSIRIKICDRGSKVGHCRRVPHYRLTPSKSRKN
Ga0209087_10031136F081048GGAMVSVKRLTWQIEILERAKKSLIDGRLVIARSRLDMALHIAKELLKRAQTYQKRDAEKKK
Ga0209087_10031137F020510N/AMTLSQLITFFDARIIGTYTPEQYASCVLEARANRMRWGMGQW
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Institute for Fundamental Biomedical Research
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