| Basic Information | |
|---|---|
| Taxon OID | 3300027734 Open in IMG/M |
| Scaffold ID | Ga0209087_1000852 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18688 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (68.42%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005846 | Metagenome | 388 | Y |
| F006138 | Metagenome / Metatranscriptome | 380 | Y |
| F008741 | Metagenome | 328 | Y |
| F009142 | Metagenome | 322 | Y |
| F011284 | Metagenome | 292 | N |
| F027777 | Metagenome / Metatranscriptome | 193 | N |
| F035669 | Metagenome | 171 | Y |
| F093492 | Metagenome | 106 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209087_100085212 | F027777 | AGGA | MSEEMPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQKKK |
| Ga0209087_100085215 | F005846 | N/A | MTSFPLPARPVASAVPASHKEFAKRTSIEGKLNGWCGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVHCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDISNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKHRIRW |
| Ga0209087_100085219 | F011284 | N/A | MTSEQGVEKTEEKVFTKKHDLHLTTLQMAAVESMERKYKKGVVENCGTKLWEMPTARLVEESIAEATDQMVYLLTLRQQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPQL |
| Ga0209087_100085226 | F035669 | AGG | MRESQLIELQGTSILTKSFFNKLIRRIEATKPLAGNLITIAEKDNGFEVSIEGYNPVTLNVCSGGVETEILVLAKAV |
| Ga0209087_100085227 | F093492 | GGTGG | MASVIIGSSIGATITSKVLQRQNFNKEPNGLETIIEAYAIQTANRDTVVPEKNTLHSAFSSSTKKYSRMVVESVTTEEQDGGITQMLVTFVGLTTASGLPPAIVRLIPTPDAGIFGPPLVIEAEFMTDINESQFIKGNISATAEIKLGNISFGQVNQMPAQINGTLMPSNPREPFTNKQQGLSLNNYFGYCTESYACERRGLFLVARTVYKEFELNFSFQ |
| Ga0209087_100085232 | F006138 | GAGG | MAAVTIGTAGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS |
| Ga0209087_100085235 | F009142 | N/A | MSNSVQINVEDALEDLLVGISGLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKVSQQAFDAEYCLIFEAFYSETPPLFTKIQNNISGTRVYTARITGQSPTIKTAKRAWQRGLKMSLICTPQ |
| Ga0209087_100085238 | F008741 | N/A | TIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPESYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPDEIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |