NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000434

Scaffold Ga0209087_1000434


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000434 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26591
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017969Metagenome237Y
F025685Metagenome200Y
F057986Metagenome135Y
F083928Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100043415F025685GGCGGMRYIADLFALVGLVSTIVVVGFYMGYATYQPKCGNMLAVFTKECK
Ga0209087_100043418F057986AGGAGMIAMVKRLLTMPSPLEMAARELMQAQRAKLEAESAREYAYHMVNYNDDRIARLQDRLNELKEQV
Ga0209087_100043422F017969GGGGGMIQTIFIPILFVCMNNNCEFMQSQTWFKTEPQCRSAVDAQKDNLRKMAAKGNAVIAQLEGTCITLKNGML
Ga0209087_100043426F083928N/AMNILQYLNGLRPAIPMSAERPCTVMSNGELRRHMLQGAVLINGETVTPDEPMDFPVFSLVFFPKSKNRRTTIV
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