NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000279

Scaffold Ga0209087_1000279


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000279 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33949
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (90.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002933Metagenome / Metatranscriptome519Y
F005476Metagenome / Metatranscriptome399Y
F012428Metagenome280Y
F073255Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100027912F073255GGAMYDQEANSQIQEALAGHKGQVDVVRHADGQHNPVHLCFGYGNQLYAWPLGQRGGQRRDIQNDFTRFFYTYRRHDWVPEWYQTHAE
Ga0209087_100027913F002933GGAMIPPIHKWYPMVQPGGEPTKTDALERRAERLQEEYKQALKMKKVKDKIDDLEFELYVKKAEQNQLRLEIFTNRKLDIYV
Ga0209087_10002795F005476GGAMNLTIRSVDVSYVQQIWPTVKPYIEDALNKGHDFPDWAYCYNIDHVQQYVTSGQWLLLVAIDEEKQIHGACTVSFINYPLHRVAFVTCIGGKLISNQATFEQLKELLKSHGATKIQGSGREAIVRLWKRYNFEPRNTLVEVLI
Ga0209087_10002798F012428AGGAGMSMLQNRSSPNIPQAPKEYDQTYMNALSNVIRLFFNNINTVQQLNLASLNLDLRTLPTDADLPNLRIGDVYRDTQDGVQATSQMLRIKVPVELTGVSGLGAVGSVGAVGGTITKNLTGVSGAGAVGTMTP
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