NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000261

Scaffold Ga0209087_1000261


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000261 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34725
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (83.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F006696Metagenome366Y
F024973Metagenome / Metatranscriptome203Y
F091603Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100026120F091603GGAMTGFQSKRESAIGRFANGSDSKRRVLGLAGEWSPREKLPGEAPPTTISIWHHPVYQPPKMETPRPGANDHLNIRSRKA
Ga0209087_100026123F006696GGAGMRFFKFLKDYYRELTPAEVIQRELACAHLDRLEAEAAVEYAAAVLDMNMTRIERLNTRLKEYKL
Ga0209087_10002614F000961GGAMNIPETIDPIRYGVLWQKVQDYERRFDEMSAKIDKMETSIDKLVEMANQSKGGFWMGMVAVSAFGSVIGYVSHWFGKS
Ga0209087_10002618F024973GAGMIWTLVLVTGINMNSILIVGYFEYEAACQKAAKEWRDLGYKVGCVQTQKK
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