NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000112

Scaffold Ga0209087_1000112


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000112 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50582
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (86.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001715Metagenome / Metatranscriptome647Y
F011292Metagenome / Metatranscriptome292Y
F057986Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100011220F011292AGGAGMTPRSFDVDTAKEMVGDARMRVIEAKARQDADNGVRDGMAHMEVQVRYWDRVVQSMELVVYDAAYRKRLERIKRMKEKNFD
Ga0209087_100011226F057986AGGAMIEMTKRLLAKPTPLEMVVKELVEAQRSKLEAESALDYAYSMVEYNTQRIERLKRRVTELQGEQA
Ga0209087_100011251F001715N/AMTSPLVPTIEENIPLPDNSKEAFPELTPAQELEMRASTIKFFSDLTGSPISPTSDNMDQAKQLARDMITDSRHRPDFAKYPNETLALLAGMVAQMNVSIVEELSDFKMYVVNKLVMEVENAKDSKTRISAIAKLGEVDGVDAFKKRTEITHKVQTIEEVEKELLDTLGALENRVIDVEAREVVRLEQEVDE
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