NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000072

Scaffold Ga0209087_1000072


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58074
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (87.63%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002597Metagenome / Metatranscriptome544Y
F009328Metagenome / Metatranscriptome319Y
F029973Metagenome186N
F042141Metagenome158Y
F044911Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100007220F002597GGAGVDIRGPALVYDPRFHSFDSWASLMCELYAPQQLEIPSAQTDWKVWGNGIKAIDVFTNEAIPSTDNYEDWQVWAEALVNAVNPAT
Ga0209087_100007255F042141GGAMKLNVELSNDTIDDIFINRLREDLELLETETVPVFSSEPEIEKQHIGALKGAYKQILSYYGEMV
Ga0209087_100007259F044911N/AMTPAELLHTDAARYATNRKNAYIEKMKQKEVDPMSEDDLNGRWLAHYEGYREGYWVATGAAKFSTDPAKLKEKNNG
Ga0209087_100007260F009328AGGAGMDDGYYCVICSRFLPSDEHGVIVHDDVPHSDMDFAEEEKPQ
Ga0209087_100007264F029973AGGAMSDRFDLEQAILRADMEGDLNLLFDRVCNGPELSQDDMANALLGLITLNSLRHEKLWNIFEDMCHQKKFKDKYEKVD
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