NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1039596

Scaffold Ga0209297_1039596


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1039596 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2165
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F034575Metagenome / Metatranscriptome174N
F040623Metagenome / Metatranscriptome161Y
F063708Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10395962F034575GGAGGMDSMTLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEEESEEAMDSMARTEATGYLDALSHVYALTYAIAFAKEDVKNRREILGE
Ga0209297_10395963F063708AGGAMDLNTFKEYIKLHLISLEQDLEENPASIHVVDIEGQIYATKHLMEVLNG
Ga0209297_10395966F040623GAGGMKVRISLEQTIDLDDAMSNDIGFELYGPPDMSNDDKIDYLMARFAEDIDTMVKYDEVLGNISVEYIED
Ga0209297_10395967F007691AGGAGVETINELINEIYEDNYSHLDFEENMGGEACDCHIHTTLNTIAHYAEIEVGE
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Institute for Fundamental Biomedical Research
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