NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209297_1003884

Scaffold Ga0209297_1003884


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1003884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7945
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F002044Metagenome / Metatranscriptome599Y
F007469Metagenome / Metatranscriptome350Y
F007522Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100388411F007522GAGGMTLKEAGLLWVATMVAIIWAYGLIQNAKAVSYWRGRHDGWTMHRRMIENKIDANDN
Ga0209297_100388414F007469AGGAGGMGYVEIIDGSGLMATIENDAIKVEPTTIVCDMCNDDRLLHEGDLFQCYSCHAINRIP
Ga0209297_10038842F000468N/AMTVFTPDWKLTVSGTEYTDIAISDITHASGRTDIYSQPNPSYLQITLVALSGQTLPFDINDSLALQVKNSSGTYVNLFGGNITDVSVEVGATGSIATVVNYTLIAMGNLAYLAKVITNGVLSQDEDGNQIYSLLSSILFGTWNDVPAASTWSGYSATETWANAVNLGIGEIDQPGLYTMENRDSSPDTFYNIIAQIASSAFGYLYEDSQGNISYADADHRQTYLAANGYTDLSANHALSQGIRTAIRSGDIRNDIYINYGNNFGSQKIATSLTSIETYGYKGETIQSLIHSAIDAQAIADRYINLRAFPQPMFDSITFPITNPEIDDADRDALLGIFMGQPLNIQNLPVQISNGEFEGYVEGWSWSTRFNELFLTINLSPASFSQVAMRWNIVPVGEAWNTLSATLTWEYATIVS
Ga0209297_10038848F002044N/AMANTRKPSKRKKINRRVVRHSPEPLSKIDQHYTALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDDEDND
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.