NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10027723

Scaffold Ga0209617_10027723


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10027723 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2459
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F004431Metagenome / Metatranscriptome438Y
F004840Metagenome / Metatranscriptome421Y
F006744Metagenome / Metatranscriptome365Y
F009143Metagenome / Metatranscriptome322Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0209617_1002772311F009143GAGGMMTKWDTIQADVADAYVYLEEEEAYNKALEEGNISLLDVNDFDEDELSKSLTLDWESYE
Ga0209617_1002772312F004431N/ALTKRIENKMTITYSLWDGAQLLGVDFKATSADEMNKAVAELQKVSKNVVAHMRKVEQN
Ga0209617_100277233F004840N/AMYKITCAYDSNAPHWSAEYENEFGAWENFFLFTDWGMADEYSTVNLYTPTGKCYTKVFYRSGMVAVK
Ga0209617_100277234F017995GGAMARMKELIEIISANCDECGGAGFLFFGDENNYDIEPCNCIADLSDELNVDWVNN
Ga0209617_100277235F006744AGGMNLDEFKKHVTATRQASKAEALSVLSATITTQSNERENLNG
Ga0209617_100277238F001562GGGGGMNKSQFEKDLEIKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFSIGLIEHEDYLAEMEDET
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