| Basic Information | |
|---|---|
| Taxon OID | 3300027720 Open in IMG/M |
| Scaffold ID | Ga0209617_10015138 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3426 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002009 | Metagenome / Metatranscriptome | 604 | Y |
| F058800 | Metagenome | 134 | Y |
| F069828 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209617_100151386 | F069828 | GGAGG | MKRAVVTMAFGPEWEKILELTHPRIDDFAKRNKMDFLVMNKSVIDPKDYNKSMIAHIMVGKNYDQVIYIDCDCLVAKDCDDFANPSEDGNDGFIAFDEGDFLDRKEGMKKLAKEFGGNITPTYYFNFGVFAMTRKHLGLLALPPLGVVPNHFGMQTWANIQAHFWDIPLSGMDPAYNCMTSVEQHYGLDRHKDAMIIHYAGQSGDMVKLSNQIKADDAKLVELGR |
| Ga0209617_100151387 | F058800 | AGG | MRLALSWIFYYLGDIVSRTILRHGYGYGLYKTLMLWSVDLDDKFNVWKEVKPKRRRKK |
| Ga0209617_100151389 | F002009 | GGA | MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLLKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |