NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209617_10004568

Scaffold Ga0209617_10004568


Overview

Basic Information
Taxon OID3300027720 Open in IMG/M
Scaffold IDGa0209617_10004568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6437
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F003660Metagenome / Metatranscriptome474Y
F010395Metagenome / Metatranscriptome304N
F027126Metagenome / Metatranscriptome195N
F060863Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209617_100045681F060863N/ANQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWQPFMQRANTDLADAAEVAFINCLEVRMYNLLNA
Ga0209617_1000456810F003660N/AMNNQTKAKLKAALATGYIMLTACLGIAFFGRFLFALITN
Ga0209617_1000456813F001981N/AMTYPTLITIPKADICKAEIAQIAQQLTDRINDGEVNPVEAHIKLKAIVKALEATIKATEQTVADEAAKHGKTFQAFGAEITLKEGSLTPNYDEDPIYADIKVQLKAREELLKIAFRQAGKTAIFDESTGEQVPVCTAKATKASIAVSFR
Ga0209617_100045683F027126N/AMATFRKYEFAVYADFRTINDSEAAPRTVVELGHINPANPKAWCVDILWEGNEPKNWAKYQTWPEPVGIHTFAGWDEQYAADYNEHKSL
Ga0209617_100045688F010395N/AMHEYHSLRPAKALTNALERLMIAVDNADLEGNHALLLEYRKSCELLGYDPAMAQWAGTKEVSIASQQNLADEVQVSYFHALNPEE
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