NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209599_10000549

Scaffold Ga0209599_10000549


Overview

Basic Information
Taxon OID3300027710 Open in IMG/M
Scaffold IDGa0209599_10000549 Open in IMG/M
Source Dataset NameSubsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23764
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (5.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameOhio, USA
CoordinatesLat. (o)39.849Long. (o)-81.036Alt. (m)Depth (m)2500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021939Metagenome216Y
F068829Metagenome124Y
F101139Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209599_1000054912F101139N/ALTHINQSNKKIMTQSNKEIAILAILKAYSNVSIEQVESLINATNNVGGISFVSLKGYSSDKSNNTEVANQLINIGASYQNMLKKDDNIYANFDISSVNVEGFNYSNIDTKGLTLAEYQQAVKSALEVALIELQAPKQSKDTSNDIWLNKALVFNLNTMRLSIFGQSVTKSVEVKGEFKKVASAPKTIAKKLIELQAKGKAQTLRRFAIDNFNGMIKVSGETILID
Ga0209599_1000054923F068829N/AMDNYHITIMSIDPNDHYGREQGDDSQKYGFYVQAKSERDAEDKGAEEFKQRYGNLPIFWLKASKD
Ga0209599_1000054929F021939N/AMAKQIAIEDVTLRLELSHRGGGIEIDLTRFGFKGEKMSAYQNYLGGGMLGRVSANNTIQAFNKPCTEKQVAKLERIAERLKKHYHSLTNPEDSEWESQTYEQNQSMAVSGY
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