NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000662

Scaffold Ga0209188_1000662


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000662 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32195
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (80.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017969Metagenome237Y
F031035Metagenome183Y
F044314Metagenome154Y
F062385Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100066211F062385AGGAMGYEAKNIPNAGKADMSGMKKVGVSKVDREYGGAKSMTGATPPKGATASDTSGERKMPIEGGVGMGKADGLGLREAKHMGMHDGRMGEMKGGSKEHECYTHERMEHEQDK
Ga0209188_100066217F031035GAGMKDLITARIQDLMAKGRELESQIHQINGALQQCQWTLTELEKQNAPEEVTDTQSAE
Ga0209188_10006624F044314N/AMYDPIAIRERVFADMVRLCHLPAWKDWAWREVQRMDKEDLFAGIKAHVLKEMNAPRS
Ga0209188_100066251F017969GGAMIQIIFIPVLFVCMNGNCEFMQAENWYKSEKQCRAAVDEQKENLQKMALKGGQMVTLIEGTCITLRNGML
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