NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000114

Scaffold Ga0209188_1000114


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92673
Total Scaffold Genes139 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)96 (69.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011824Metagenome286Y
F021767Metagenome / Metatranscriptome217N
F048761Metagenome147Y
F089783Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_100011432F048761AGGAMNNVSILANQAIERAKNLQEFAVFRDMEDIVFCGKPIPYNLNHVMGEQVEITVPAIDQEEAEQRVNVWLKSQRE
Ga0209188_100011464F021767AGGAMELEQIKEQMSASASKGALIEKVTFAVLPIMFACVVYLMNALASVNHELTILQSKMQLVVTSDNKQAPNMGAELAREKLRQDFMQQNTEALSRSAANKAVLDTLVWRVQELEKHKEKQTANGGKK
Ga0209188_10001148F089783GAGGMTVNQANLVNAKASTGEVTVSAKNIKFRTLAAKGQSLAV
Ga0209188_100011499F011824AGAAGMTLPVFKNGDALYTVIMRDPDARNRLQKWTTTSRSIQARVDDNKLYIYDHNTLSLFIVTWTHGWDNVLIWDCYAKRHIYF
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