NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000028

Scaffold Ga0209188_1000028


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)162042
Total Scaffold Genes259 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)195 (75.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001091Metagenome / Metatranscriptome781Y
F043282Metagenome / Metatranscriptome156Y
F066590Metagenome / Metatranscriptome126Y
F077226Metagenome / Metatranscriptome117Y
F086845Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_1000028126F043282AGGAMLKAEKFEVRDVIRSYDFKPMVGREDCFVEGEILEITNEQGYNAYKIIVTKDSWSDAEDKGRVGKIVYCPVAVFHNDYPGRVINLSRI
Ga0209188_100002815F086845GGAMPIEITNSLRSSSLIRVEGIGTYYANLDSLAVNTNEVISSANIRRINWSTNGSIQIVRNGNNIVSLHNAGETKLDEWGHTLANNNTSNVVITVVTGGTLLLEVTKSATYTTPLTGM
Ga0209188_1000028153F077226AGGAMGFEKIVLDKVAKVLKQERQAYFVNGTLFVLASEPQARQVFSKLFKDYNGKVDVSLVGHEYAFDWR
Ga0209188_1000028225F066590GAGGMFNFGRKKKIVPKEGEDYKFIDFTDSDLTGIMVLKGEYSGVVYHYGKVRVKEQGEFATLEFGFTLVNPGKHDIDLLQKDEGFVTIMGDVLSEILTKGDNEKIGNHDPEESDLL
Ga0209188_1000028230F001091AGGMNIRELAKKMAVEHKLPRADKYDLFLREFDNKVELIGLIQDPTLNMNDFRGREMLFPKRWVTLAVYEASYKVAV
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