NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209443_1030114

Scaffold Ga0209443_1030114


Overview

Basic Information
Taxon OID3300027707 Open in IMG/M
Scaffold IDGa0209443_1030114 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2332
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001900Metagenome / Metatranscriptome620Y
F073145Metagenome / Metatranscriptome120N
F095469Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209443_10301141F073145AGGAGGMAQSVGNARNILVGASPLFLSNVDINDADYIANAEAGNVRAAVASSAGVPGTVGVPAFVAAQSYSTTLNNVTQTAGLFGYRNVGFTNNGLQITYNPTYDSVTVDQLLDTAKLFKSAME
Ga0209443_10301143F001900GGAMLIQAASGLERMMYANQKGVLKDSTVAQISAYVYYEAAVIAKLTTNKAFQNAFSKLIFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKTGQVGLSFGINYSFLPSKSMVPASTGKRRHMFINKASIMEKGEPLVIRPKNADRLVFEIDGETVFMPKGASVTVRRPGGSGARNQFTLAHSRFFSGRLVNDSIKKSGFQRLFNSSMSKALGVPSDIKRVKYSFSANTIRSQADSALTLSFGGAM
Ga0209443_10301145F095469N/ADTVWRNKYVKSISTFDWDFEYTGSAYTGTGNALADNLLADYVLTIKAEII
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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