Scaffold Ga0209816_1069307

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209816_1069307

Scaffold Ga0209816_1069307

Overview

Basic Information
Taxon OID	3300027704 Open in IMG/M
Scaffold ID	Ga0209816_1069307 Open in IMG/M
Source Dataset Name	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1490
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium TMED32	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location Name	Atlantic Ocean: West Antarctic Peninsula
Coordinates	Lat. (^o)	-64.8156	Long. (^o)	-64.0406	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076499	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209816_10693073	F076499	AGAAGG	MKKTSIIILMALALGVMTLIATKQQFKVKTVVITESHTDTLFIEKPADTVFLDKVRYISKPIHDTIYVHEGDSIASYSGEFFVDSTVTVLYNIDVKGMIKGFNFGAVKNYPPQEVITKTITNTLTEYQTMEYKALWAVLGMDMMGSPTIGLDFQNHNKVFGVNFNPIDKIVGFNYKFRLFKK

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