NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209816_1001018

Scaffold Ga0209816_1001018


Overview

Basic Information
Taxon OID3300027704 Open in IMG/M
Scaffold IDGa0209816_1001018 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21208
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (81.40%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044158Metagenome155Y
F045381Metagenome153Y
F055699Metagenome138Y
F071662Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209816_100101813F071662N/AMEPITLIFLSGLVSGIVVGDALDPIGLSDGDNHNVVKECTTKTTRSKVYDKELKEYISNEYVEEICVGRYVPPDRPILNAVKNKIAH
Ga0209816_100101828F045381N/AMKKTPIHALTMTVVILVFAWLFIERANADDLFGGESFFASTPTKSDTTTIWKGDGSLVIIQGAEKAGYVIKGDSDGSDIEYFVVPKDDGSSTFIYDDGLTICNSSMGCY
Ga0209816_100101829F055699AGGGGGMSDEREVIFEDDNAAIEIPDDDIQWSHEVLNQFELLIDTLGIETVMFLMSQEHEEVVSNWISNKVDIQHRTKQ
Ga0209816_100101835F044158N/AMIRDEVLIIGLASADIRKGKPLNDTDHARLLKAVGNVRDCYSKTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.