NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209447_10000143

Scaffold Ga0209447_10000143


Overview

Basic Information
Taxon OID3300027701 Open in IMG/M
Scaffold IDGa0209447_10000143 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18117
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002396Metagenome / Metatranscriptome564Y
F004933Metagenome / Metatranscriptome418Y
F005213Metagenome / Metatranscriptome408N

Sequences

Protein IDFamilyRBSSequence
Ga0209447_1000014314F002396GAGGMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYDVLMILTVVAVYSSVSRLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKDRTTGTHDGRAHLDAGEKQDIARKETVERCQ
Ga0209447_1000014320F005213AGGAGMPSSATKMANEPERTEEERQPDVQLQDVLFSALASSVCYWTTIFLLAIVGAYLIQWWLTHPGPYAAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALRGQRTWKMLITAASLVAVMGCSKVLEIYLAPM
Ga0209447_100001433F004933AGGAGMSSWPALFAAAVAMWLILKGPVVKKPSWVQKTCRLAMAFFLYSGFLYLLKWNPFWRWMSSVDFENRNKAEGFLILISTLVWIIATLRILLLGSRFPALSAGSRELENRAPRQEKLWPFIKNVAIFHYFFTRR
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