NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209446_1000030

Scaffold Ga0209446_1000030


Overview

Basic Information
Taxon OID3300027698 Open in IMG/M
Scaffold IDGa0209446_1000030 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47265
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000165Metagenome / Metatranscriptome1824Y
F007373Metagenome / Metatranscriptome352Y
F007553Metagenome / Metatranscriptome349Y
F047734Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209446_100003010F007373GGAMCYTSSRITALSIEFVAKPDEAHKVHAALPAAIDGALGEVAGFAGSFVMIANHEARLVTVVTLWSGEDRLRRCSENVRWVRALLAPYLDRCLRVQTLAAFVPGATQSLQPFEQPCAEAAFETCLQEEPALCVA
Ga0209446_100003037F000165GGAGMIMTITKHPPLVEDLRNHSQEQIAELRMLLQSGAPSRPDPRRPGFFEVEGRSSIYYVFKYPTGTKVMLLGVWDRESDPVAELVACTCPAA
Ga0209446_10000305F047734N/AMNRRYVLAPEAALDLVQIWRYIKEEGSLEIADHVESVILDKVAFLAGLPGAGPI
Ga0209446_10000309F007553GGAGGMGAGGMGVEELELGAISKMFEDKICAVDFCEGAAVASLAQQDFCLNHFIELCYENLQRIDPRGQKTGRMPLDLASLRAFIEECSRRTLDVALHCEDIDNLQRGRLLDILLWAGELFLLLRAPTRGFADSLLEEHDSVLTRLAARHF
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