NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209033_1053201

Scaffold Ga0209033_1053201


Overview

Basic Information
Taxon OID3300027697 Open in IMG/M
Scaffold IDGa0209033_1053201 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1449
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F093799Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209033_10532013F000545N/AMRADAHPFKCSSCLAVTPHIELHRYETSDIPEAPEEVWLIECQRCFLQRIIYPADRVASKEDDITRCDKCGNYKMKAGSCRICRLAAGFERQMVRYWNGNETLERPYEDGKAPLY
Ga0209033_10532014F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADANPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKAIQTTKPELASFIKEQRPNDPEPIVWDVTAIAAELGAEVIDELPLCKCGRGPMILKSGTKDGKEYRGYTCPSKDRADQCPARWMRIGADGHWVFQK
Ga0209033_10532015F093799N/AVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISDFAGREKLDVELPR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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