| Basic Information | |
|---|---|
| Taxon OID | 3300027697 Open in IMG/M |
| Scaffold ID | Ga0209033_1018266 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2909 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| F005054 | Metagenome / Metatranscriptome | 413 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209033_10182661 | F005054 | AGG | MAEILINTQSPVTHQVFWSGDIAIPDNVPTVRLYDITNDPAISPAINPTHLLTLLTSVLDENNPGTYTVNIPYQYTNRNKTLRLVWEYQVGGTNVLRSDEVYVVTPYVDFNHVQDLGFSMDPSDPGYKSYKDLVRAERYARKQIEQHTGQSFYLYDDLYVVYGYDSDILPLPAKINTLHELYARDTLLVDTINDIDNWNYPVEISETGYGIKINRAGMIDNTVYTANGMIPPSIHDYVSGVFQSGIPYKVQGKFGWEKVPDDVELAAIELMKDYFNKDSVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADKLLADYVLTTKVEII |
| Ga0209033_10182662 | F001229 | AGG | MNDLIDSVLSMHLDVYKQTEVQDPDTGAIVREWSYYKTVSCHAKGVISNSATTRSSDKQIFSNKYINDQIIQVRTSERLTPREKVTNIRDNEGNVIWHEINFPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ |
| Ga0209033_10182663 | F001900 | GGAG | LDNSHLLVQASSGLERLMGGSGPGGVLKDSTVAQVSAYVYYQASVISKLTSSKQFQNAFTTTVFEQIEKDFGNYVDALARTRPKSLHHVYEWKKVGNPTARLFKINKISEQGLSFRVNYDFKPSRSMVPTGKGKRRHMFINKAAVMEEGSPLVIRPKNSERLVFEYNGETVFMPKGAAVTVKRPGGSAARNQFSLAYSRFFSGQLVNTSIKNSGFQSLFNSRLTKAMKLPSTIKKVQYKFSANVVRSQADSALALAFGGAL |
| Ga0209033_10182664 | F000258 | GGAGG | MTANYKLDAMLELRKYLWDQLSSRDIFDENDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKVGMSYEDNWLICCEQIMLTLYSTSISDINEMRNYLTDEFRRMDESARDINRWSGLSDKFKFHTIWIADISPTAPSEELQGFFAAEVILEIKYSRITDGQGRFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |