NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209033_1000268

Scaffold Ga0209033_1000268


Overview

Basic Information
Taxon OID3300027697 Open in IMG/M
Scaffold IDGa0209033_1000268 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29404
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (31.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028809Metagenome190N
F065771Metagenome127N
F076018Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209033_10002685F028809GGAMEILNCQKPAGIESLRQNRIAMKAIERQTGLEFLSISDQEPSRIDGFIFDPAKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGIKDRMALINMATATQYKMNQLF
Ga0209033_10002688F076018N/AMSLATDYLLLNIGHSTLKWHLDRIKSGSFTIDQVAVFYAPDPKKSVYKTVTRGLEELVKMKPENLPIQLR
Ga0209033_10002689F065771N/AMGGVQKYLTRQVQDGEISKDDLLESQSKLSLLNQAPSLVLSAIAKGWMKYPDKLETITEEEETAKWINTYDCERAYHNRVKGMTYREIGKLMGCGMNRVSAILHHGENIVLQRKMKSLGHTVVSIPSKATVQEHITNAKSKTKSKQ
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