NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209530_1005320

Scaffold Ga0209530_1005320


Overview

Basic Information
Taxon OID3300027692 Open in IMG/M
Scaffold IDGa0209530_1005320 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4269
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001759Metagenome / Metatranscriptome640Y
F008209Metagenome / Metatranscriptome337Y
F023640Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0209530_10053204F001759AGGCGGMTLKSALQDLRETTLAAVSGLLAKLSYLASLRRKEGGYGHWGMALVHGEEASDRALKTAHTEVLSNVLRTPISELEEDLRESSRGKETAGSYVEGMREQFNELLPSPQDAASARHLNSVLIALSRLEKSRKPATPSTS
Ga0209530_10053205F008209AGGAGVKRLLFVVAATLMFLNTLAVPNLAHADGGAGTTSCGGGNGMCKP
Ga0209530_10053207F023640GGAGMNLAIVLVVTAAAALGIILRLAVKQSLQVKESSGLAVTIRPIDVVAFRNLTNTAEDDYLRRRLPPGDFRQVRRERLRAMAAYIQTAAMNAAVLIRVGEAALAAGDPRIAQAAEQLVNDALLLRRNTTLALYSAEAKARHSP
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