| Basic Information | |
|---|---|
| Taxon OID | 3300027687 Open in IMG/M |
| Scaffold ID | Ga0209710_1059158 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1687 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000107 | Metagenome / Metatranscriptome | 2222 | Y |
| F001156 | Metagenome / Metatranscriptome | 763 | Y |
| F002166 | Metagenome / Metatranscriptome | 588 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209710_10591581 | F001156 | GAG | MAKDNARAILERIVGIKGKGELADKFKLAFAEKYKIKQEEVKQGIVDKVYNKNKVERTXN |
| Ga0209710_10591583 | F000107 | N/A | MTIANTKVVDNTSKYIVQSKGIGSEIDQVLVDAEKLASGTDKSLVSLIECYYLIEGTGTLTLSTSSEENDLTLTGKGKYGLRPDQLKFGNDKQILLTTDSNVESYLLVSEFRRNN |
| Ga0209710_10591585 | F002166 | N/A | SFQKFKKTLTELKEDSPKETAEFKKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |