NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1028938

Scaffold Ga0209710_1028938


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1028938 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2757
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063609Metagenome129Y
F079223Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_10289382F079223AGGAGMARLKSLNIRLKFHTSYNTHPIVIKYKDSAVDGIDLHIDQTEQKEEITFEGFSPDDAKQKVSCTLVYNDRGVDIQSIASLQMQDNQYIANVVIKNCKDIHFNGRLDLVFSKHWFKHNILEGASLDEDYVHWDQMSFTDEEVFCVGDSFTAGHGVASNETWPSLLNRNALNFGSGGLSHDGCVKNVKHILQNSKHVKQIICLLPGATRKLLEFDFLNCKGYIPISHVTRWQLPPEFDNTMRDIKNFILNTEEITKDWIMCCHKIIELCNNNNVECWVSTWSEDLHRHIPNKNKLPVFPNLTTFMERASDKFHPHKKHYELFVKNIKHYIDKRQS
Ga0209710_10289384F063609AGGAGMARLKFHKPHIYIFNSAGCHGHYLTYLIDRLSNRTPKIGQLPFNNIGNSHNSVNYSGFVEFIDSPEHEENKSLKDTNIIKILYSTDILYYERVAMARAGDADRDIANIHSDISFLKSYNKEFYDKIHRLYSIENDSVPKWLLRDAYKMGFLDWEKQGSVVTSKQDIRWMEDNLVEDNTVHYTQVGVFFTAEKLKRELRELDSAFGLELSFNDFESINEEFLSKNKILQTHGNTKLVLDAVKENRDVPVPLLDIIQQAYVYAQLEKQYDFITMPMTDSFFATTREITDYVNLYPQHYKAMNPNLPKFNNIDNPFFLHRQHNK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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