NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1009874

Scaffold Ga0209710_1009874


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1009874 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5511
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F004614Metagenome431Y
F031562Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_10098743F002602AGGMKNTDQIKALAIAIEEKDNIIRNLSAELGNLEVQIAEYRQIVKELSDKLELYESKYGTVFKPSRNS
Ga0209710_10098744F004614N/AMNRQQQHRAYSHHDHDIDSIDEEFWPMMGILFTIWGAWTGVVHFIDWLTVDAIIWWAEPLTIVPFVFLLVMSERYNSLNPLHWWPMVWGYKIKLPDDERITIYPINGEDLVKEHGGPLHIHIVDYEHIKFRRKRDAVMYALRNF
Ga0209710_10098745F031562N/AMKTILLNGCSFGECWNTTDSFIRSLGCDKVVNISKVATSFQRTCRSTIEWIAQNGNPEFVIIPITFCHRWELAITQEEDQLDGSWFPLQRKELIDEHKDKLRLDVDVDKLKNMLDLYYGSIPTVKTYWDKMFTEIVMLSAFLENKRIRHLIFDMCNGFDKKHINGYKGFDKLKLIESNKNVLNLFNFCGNRYM
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