NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1004957

Scaffold Ga0209710_1004957


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1004957 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8515
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009991Metagenome / Metatranscriptome310Y
F051469Metagenome144Y
F063066Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100495713F051469AGGAGMIEKFTVEIEVGDRVEVGRMHLANQTIKAIEIDKWGHPVMVLSSGRKRGLFNMRIKKLIPEDIKRVQEPAEVMMTKEQWEEAQKKIDQAKAE
Ga0209710_100495714F063066N/ALVGTFGTIIAQSYALGCKATEKDAALATSIIEDELCDFYTFAVEGTPGQFNAADSTGDVNLDPNQADATDPGVIADAEADIEVEIEARISENDSAGGVHVDVRYLPADGVTSAGGEVVYGFNSARVNA
Ga0209710_10049576F009991N/AMHYKSRIYQLNSLRLGLVHEDNIYGKPTIFLAMGSQSKDTEACKAIVEWYKDLHAKNESNLIAIPFDNNGSEPGDDYEIVSHYENILGIKFYITEKLEATHQFFKDFGVPTNDFTEYHFNAKTEFMRKI
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