NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1003009

Scaffold Ga0209710_1003009


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1003009 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11503
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014160Metagenome / Metatranscriptome265N
F015230Metagenome256N
F025069Metagenome / Metatranscriptome203N
F036311Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100300914F014160N/AMKTLKDSMQELNAPIIDWENDHDSEVLQQDFVEAQLGEYGLEFSIYASRDISISHGTHFETQDVTVGDAHFDIEILAVFDQEFDDIDITDEENEMIINVIVNHYE
Ga0209710_100300920F025069GGAMALGLWGMSMANTITSFDIASASSIAQLVLSVLGIVYLGVKIVNETLNGRVEREGKRIANEINNRELDEEL
Ga0209710_100300923F036311N/AMKIYVDTVTKELVLLNGIEYRYPAYCEIQRQKQGDFIIIKTTNNVAVLDKTIFSDLQNEAGVAYASFAALKTALDSYFDSTL
Ga0209710_10030093F015230N/AMNDSGDIKAKFTATERAIDKLQQPTIEIERTRNAIRETQKRNDEIGTELEAVQKRIEKGYKAIRESSNGEQRIASAKKEISRLGGLIAWQDNRSKQFKTIIERGY
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