NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1002985

Scaffold Ga0209710_1002985


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1002985 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11568
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F019836Metagenome / Metatranscriptome227Y
F045764Metagenome / Metatranscriptome152N
F061271Metagenome / Metatranscriptome132N
F062159Metagenome / Metatranscriptome131Y
F076593Metagenome / Metatranscriptome118N
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_10029851F019836N/AMQKAELELPVKQFHRLYDLLGDILDHDSESGYFNMDNLDIDFLEDIRTELFNQIPDEKTYTDYALTGRSSNPSILAGKLYKIVDHTSKYGFKLEVEDGEVIYCLVEKCAFLNGRDWTIINVED
Ga0209710_100298512F076593N/AMILTEHQKNELDAVADSVSHYIEDHLRETINWQMPDSLVDELQEDQFMEAMDYAYEKVLKLISE
Ga0209710_100298513F007892GGAMGRLIEISPQQDVVNKINAKADFTHNINNTRLERYTVSTQSILKTANPSLFSKNTWQIVDDAFNSDHELFGGWLSEDDIYFLDYGLSVSDLKEAMKIAKFNEQLAIYDNVSQKVINVAD
Ga0209710_10029852F045764AGAAGMKLTDEEIKEIADRMDDLMWEGFHDIVYDVYLQREDSFLDEEISDSDVIKVRKELNKYI
Ga0209710_10029853F062159N/AMKNLVSYIEIDWSGVCSDFDLEYGDISPEQTFEIDHALHKINKVLNEFIIQNR
Ga0209710_10029855F061271N/AMIQELDKVVHQWCDDNDRWMYIEYDTDGKVMGLNFMQGDEYECFKKSWCVSDVGMTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNATKCYANKCCKAISGR
Ga0209710_10029856F092077N/AMTEELSPLKRSFERINELIPHSHDVLLRCSLYEMCVELTNKSFSEGINTKY
Ga0209710_10029857F005129N/AMKYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGIKTEWGADINETEMEFYVNDKRCKYVGFKELYTQLYGNSFNTWEVDLTRQIEEVVAKRIAKEYPGCDVNF
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