NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1000718

Scaffold Ga0209710_1000718


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1000718 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28625
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F039832Metagenome163N
F076517Metagenome / Metatranscriptome118Y
F101908Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209710_10007181F002182AGGAMIYTDQENEWLSKPAKNKRASNQTADGRPPRGKDYRKHDWAITTTIEVDGVSYVMPVQV
Ga0209710_100071813F076517GGAGGMYNWFKNLIDAYDKMFVIEKPKKPIVYKIGNKKYIRTKRISKRSVGRVKYIKQGEGE
Ga0209710_100071816F039832GAGMERKIIILLTLILIGIGATSCAKPKVNTVPTEMDTIGKLDAISTVLGCMFAPSACQDKKDLGKTEEDK
Ga0209710_10007187F101908GGAGGMDTRDIPHWVVGDKHIYNQLEAWQEIGESKREFRFYFHDHVYDRYDWSREPTQTWDNLVHQRCLQLRQKYRKLSLWYSGGRDSHHVLRSFAKHKIPIDELLLLHWTMNPIRSAEYYDWQLPLANRYKEINPQVKITTVEVGSKQYERYYGWMTPDKKYFVDDGLFQPSDFEWFTVNLCNISDSSTGVIVALEKPYLYLSAGKIYHRFIDKVIREYRGSISEFEMFYYAPEMPELYIKQCHILAKYMKQNYPNKDQGFFDEFIENPHGHYYSEFNTACGRGPAINEDVPANNGKNKYTGAHTLFDGLIDLAKKENFQSLKVWEDYSSHWTNKTPQAFEKNYRTGATGIRSNPKFIMDYAQ
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