NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1000395

Scaffold Ga0209710_1000395


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1000395 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42302
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (83.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F010878Metagenome / Metatranscriptome298Y
F022084Metagenome216Y
F094102Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100039515F022084GGAGGMEHTEYLKRLFNHIESKGYTIECECEGEDITKDDALTQVDEAVIYIIDKDGHSLGWIHWTYWNDWDESISDYTLELEKILELDKFIDGIMKEVA
Ga0209710_100039517F010571AGGAGGMSNATMQTYIDKLYEELYEKYYEEVGKTTDDVEYIEKEAERLAEIDLDNLEMEG
Ga0209710_100039519F003976AGGAGGMSRTYNDYYFEKLDILDTLDKLEMSVRFLNVWVKEPMGLENAKYILEKNANRKFNWFDMDMIKDIVNTEGGV
Ga0209710_100039521F010878AGGAGMKITAWNIGIVWEDGTEENIGDVPDWVANRVDEFLNELEEVDDD
Ga0209710_100039526F094102AGGMIDGFLTPMNKEEYKVWEDWIMEYNHNNPKDPIAYEVKWNEDNYKVKLLNSRVDTEGK
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