NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209710_1000367

Scaffold Ga0209710_1000367


Overview

Basic Information
Taxon OID3300027687 Open in IMG/M
Scaffold IDGa0209710_1000367 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44941
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (90.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.235Long. (o)-150.0691Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000375Metagenome / Metatranscriptome1217Y
F001153Metagenome / Metatranscriptome764Y
F050274Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209710_100036717F000375GGAGGMSKLYDLEEKIMDCWSVCNDLGVVLRQIGDGDREPTPDEMMNTIMGMQQLYQWKFEQLINKYEEVIEAQRK
Ga0209710_100036726F050274GGAGMRYEKQARAHIRRIVRDARQDWTTCVYVRPLCEDEVLNDRQHEGEILDAVFGCDETVISFHNMTTGRDLGWIMVVLDSEREPIEIISDHSANRYIEQLVTKAESKL
Ga0209710_100036731F001153GAGMSIPKKPYSEIIAKKVRMDTRNGVLVKDTIGSIQKYQNAPSSTSTFYKLYGSIISETKAEIVGAIGSVVVQQALDGDFKSQEFYLRSKGGWSPNSTLNEVEQTQDPDTDESAIDSLLGLLGKNTDPDETINCNCENGECNC
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