| Basic Information | |
|---|---|
| Taxon OID | 3300027683 Open in IMG/M |
| Scaffold ID | Ga0209392_1012710 Open in IMG/M |
| Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2598 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | near Jamestown, North Dakota | |||||||
| Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F013517 | Metagenome / Metatranscriptome | 270 | Y |
| F017987 | Metagenome | 237 | Y |
| F043890 | Metagenome / Metatranscriptome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209392_10127104 | F001018 | N/A | MTHITKTKLDDLSIIKLYDHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYAMAAHEDALERIKKEGELIAQAKRHHESQLAQLKNLLGWLRRALPLNSNRIQGKNYEFVLSKKKDFTVEITSDPEFWHTDERSKYCIQQETTTTKRIVVRSISGEVLSDRTEPKTKLETLPNLDAIRNAYQNGEHLPPGVKVEQQYAIRKNRLFSTKWMESQAPEYFGELLQESDPAD |
| Ga0209392_10127105 | F013517 | N/A | MFESLFAIVLPVVKDLLWAAAGMLLTYALNKIQTQFNTI |
| Ga0209392_10127106 | F002738 | N/A | MSIETYGLSSEQYAEFFESNLRTAVALYLQTFNALASVNVDFKTIFRLYQETIYVTNDDCRRYQKANNPEAIKDNDLFGLTPSREELMEEIQSVNAKVDALVDYLSKLVETTTDGLNGLVKVIDKD |
| Ga0209392_10127107 | F043890 | GAGG | MQKKFSEDMLKLRSIKKLKIEYIEEDDGSSTIQIEWDNADPDLQWWNDLGEEGQKTFILDSLQQALDCYVD |
| Ga0209392_10127109 | F017987 | N/A | WYAPPQDHISDGKFVLLHTKSGAQAPLTHWRTYRPKEVFSQEHAWDLFFNMMEAGYVPFPGTALPQLQSAVKKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |