NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209019_1099464

Scaffold Ga0209019_1099464


Overview

Basic Information
Taxon OID3300027677 Open in IMG/M
Scaffold IDGa0209019_1099464 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)828
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035802Metagenome171Y
F099448Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209019_10994641F035802AGGAMVDITSNILKNIFSKKLTKAKDGIAKSLKTKSLKAIEDYKNSFKFELPGTETK
Ga0209019_10994642F099448GGAGMKISKQQKTMKAILKVKTQSFLDNYKKNLFQDILKKPELDVVNESDKQVKQWIKDKTLTDDLLVDAIKNVMKERIKHG

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