NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209019_1009832

Scaffold Ga0209019_1009832


Overview

Basic Information
Taxon OID3300027677 Open in IMG/M
Scaffold IDGa0209019_1009832 Open in IMG/M
Source Dataset NameMarine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3927
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)8.0Long. (o)-156.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042379Metagenome / Metatranscriptome158Y
F046430Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0209019_10098325F046430AGGAMIERGQTREIPPSRKAVAVEGISGIFSEPRHGCGRNISVVFHT
Ga0209019_10098329F042379N/AMESKKSMIFAPGWTQSIDTGGARERADLQSYISDTFKAIHGIRPRWMNLNGMSLEDLRAEAQSVENEMVASIERERAEEAHRQAEMAAHHLAVSLAKKPVARTFKPFANLKEMLV

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