NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209482_1038923

Scaffold Ga0209482_1038923


Overview

Basic Information
Taxon OID3300027668 Open in IMG/M
Scaffold IDGa0209482_1038923 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1837
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042422Metagenome158N
F048574Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209482_10389236F042422AGGAGMPDKNGIERTYANKDEYDFDGGEVDEPQLYNFKVNVKWTGTIASFDIVAETEQEAVLVANKKLNMDSNGLIHFDTEKME
Ga0209482_10389237F048574GGAGMTNTKVTYLKNDTVKLVMDMDDYRTLLQGNIDLKSAVEMMHECHTIYLEDLGKLDTLEWRMARVLGFKRKRSPATGGDGGYYYGSYVLSNHVHAEKED

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